PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526885.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 306aa    MW: 34300 Da    PI: 4.4379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.5e-10133176755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++Er R++ +N+ + +Lr+l+P+      +Kl+  +i   A++YIk+Lq
  XP_010526885.1 133 MAERMRMRLLNDNLYKLRSLIPNV-----TKLDRKSIMLGAIDYIKKLQ 176
                     79*********************8.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-14123188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.433126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-11129180No hitNo description
Gene3DG3DSA:4.10.280.109.1E-12131188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-11132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7133176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRHGSSGDVI EIWELKHIKL LGKIRTLVGL DYFVVRSFWF VKLLGGYCGR AEEMIDENNG  60
GEGFLPNNKQ MDMDMLTEVA EDDVPLGMEA LTSSMGNVAL NTHHVAECGN PSLPVKEQQD  120
VDDEEEQGEN QMMAERMRMR LLNDNLYKLR SLIPNVTKLD RKSIMLGAID YIKKLQKEVK  180
ELQEELEKNS DTEDGSDQHR QGGGMSSVNG ADNELMMKGG GVFEPQVELA MVKVDGSYEF  240
SVKVICEYKP GGFTKLMEAL DSLELVVINA NTTRSLDLVS NVFMAERKDG EMVQVDHVKD  300
SQLQIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526885.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1
SwissprotQ9ZVX22e-56AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLD7L8878e-56D7L887_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.3__3272__AT2G16910.12e-55(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-46bHLH family protein